PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0178s0023.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 312aa    MW: 35407 Da    PI: 8.7478
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0178s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.22.8e-15273985
             trihelix  9 aLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85
                         +Li++r+++e+r+ ++ +k  l +e++++++++ ++r ++qC++kwe+l   yk++++g k+r  e     p++d+l
  Mapoly0178s0023.1.p  2 KLIRLRTDLESRFAKSGRKTELRDEIAEALQRERITRDAQQCRDKWEKLTAGYKEVRDGVKDR--E---DNPFYDEL 73
                         8************************************************************97..3...34788876 PP

2trihelix57.44e-18222300285
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          W++ evl+Li++r em++++ ++ ++++lWee ++ ++++g++++ kqC+ekw++l  +y  +++g++++  ++s   py ++l
  Mapoly0178s0023.1.p 222 WKRVEVLQLIKLRGEMDSQIVKSTRRAALWEELAELLAAQGIKKNGKQCQEKWDKLMAEYNDVADGKRDQ--GES---PYVTEL 300
                          ******************************************************************9984..444...566655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.321151IPR017877Myb-like domain
CDDcd122035.54E-16258No hitNo description
PfamPF138372.6E-12273No hitNo description
PROSITE profilePS500907.689214278IPR017877Myb-like domain
CDDcd122039.52E-19220284No hitNo description
PfamPF138371.1E-15220301No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKLIRLRTDL ESRFAKSGRK TELRDEIAEA LQRERITRDA QQCRDKWEKL TAGYKEVRDG  60
VKDREDNPFY DELLPLLLGK SLKREQERDK DTFGSGKEDV GRDYSEELSR ELVVDGFTRE  120
IDKDGLCRDG ARGRKTFKDN DDDGDEAEAR TLSRKKKGSE EKEGKWRAEK RAQRGIINNA  180
MIVLAQKLVG DRVSAVVSGV AEPLVVESLE GPQGPKRRSK NWKRVEVLQL IKLRGEMDSQ  240
IVKSTRRAAL WEELAELLAA QGIKKNGKQC QEKWDKLMAE YNDVADGKRD QGESPYVTEL  300
TAIIGRPAEA A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001757788.11e-110predicted protein
TrEMBLA9RUD21e-110A9RUD2_PHYPA; Predicted protein
STRINGPP1S224_109V6.11e-117(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1063658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-09Trihelix family protein